HL_7QCA_027

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUUCAGCG

Length

8 nucleotides

Bulged bases

7QCA|1|L50|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_027 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3827

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7QCA|1|L50|C|1130
7QCA|1|L50|U|1131
7QCA|1|L50|U|1132
7QCA|1|L50|C|1133
7QCA|1|L50|A|1134
7QCA|1|L50|G|1135
7QCA|1|L50|C|1136
7QCA|1|L50|G|1137

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LDD

60S ribosomal protein L31

Chain LP0

60S ribosomal protein L17

Chain LR0

60S ribosomal protein L19