HL_7QCA_032

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AACACCUUU

Length

9 nucleotides

Bulged bases

7QCA|1|L50|U|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_032 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.352

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7QCA|1|L50|A|1305
7QCA|1|L50|A|1306
7QCA|1|L50|C|1307
7QCA|1|L50|A|1308
7QCA|1|L50|C|1309
7QCA|1|L50|C|1310
7QCA|1|L50|U|1311
7QCA|1|L50|U|1312
7QCA|1|L50|U|1313

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LR0

60S ribosomal protein L19

Chain LU0

60S ribosomal protein L22