HL_7QCA_034

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCUGAG

Length

6 nucleotides

Bulged bases

7QCA|1|L50|G|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_034 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.385

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7QCA|1|L50|C|1382
7QCA|1|L50|C|1383
7QCA|1|L50|U|1384
7QCA|1|L50|G|1385
7QCA|1|L50|A|1386
7QCA|1|L50|G|1387

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LR0

60S ribosomal protein L19

Chain LU0

60S ribosomal protein L22