HL_7QCA_039

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AAUUGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_039 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3115

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7QCA|1|L50|A|1551
7QCA|1|L50|A|1552
7QCA|1|L50|U|1553
7QCA|1|L50|U|1554
7QCA|1|L50|G|1555
7QCA|1|L50|U|1556

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LR0

60S ribosomal protein L19

Chain S60

Small subunit ribosomal RNA; SSU rRNA

Chain SI0

40S ribosomal protein S8