HL_7QCA_040

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUUG

Length

5 nucleotides

Bulged bases

7QCA|1|L50|A|1563, 7QCA|1|L50|U|1564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_040 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2891

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

7QCA|1|L50|C|1562
7QCA|1|L50|A|1563
7QCA|1|L50|U|1564
7QCA|1|L50|U|1565
7QCA|1|L50|G|1566

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LR0

60S ribosomal protein L19

Chain LW0

Ribosomal protein L24E