HL_7QCA_044

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

7QCA|1|L50|A|1692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_044 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1072

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7QCA|1|L50|G|1689
7QCA|1|L50|U|1690
7QCA|1|L50|A|1691
7QCA|1|L50|A|1692
7QCA|1|L50|C|1693
7QCA|1|L50|U|1694
7QCA|1|L50|A|1695
7QCA|1|L50|U|1696
7QCA|1|L50|G|1697
7QCA|1|L50|A|1698
7QCA|1|L50|C|1699

Current chains

Chain L50

RNA 23S

Nearby chains

Chain S60

Small subunit ribosomal RNA; SSU rRNA

Chain SEE

eS30 SEE