HL_7QCA_045

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UUAAAUG

Length

7 nucleotides

Bulged bases

7QCA|1|L50|U|1734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_045 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.251

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7QCA|1|L50|U|1729
7QCA|1|L50|U|1730
7QCA|1|L50|A|1731
7QCA|1|L50|A|1732
7QCA|1|L50|A|1733
7QCA|1|L50|U|1734
7QCA|1|L50|G|1735

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LV0

Ribosomal protein L23

Chain S60

Small subunit ribosomal RNA; SSU rRNA