HL_7QCA_061

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_061 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.2368

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7QCA|1|L50|C|2431
7QCA|1|L50|G|2432
7QCA|1|L50|G|2433
7QCA|1|L50|A|2434
7QCA|1|L50|A|2435
7QCA|1|L50|G|2436

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LDD

60S ribosomal protein L31

Chain LR0

60S ribosomal protein L19

Chain LU0

60S ribosomal protein L22