HL_7QG8_008

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QG8_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.08

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7QG8|1|0|A|320
7QG8|1|0|A|321
7QG8|1|0|C|322
7QG8|1|0|U|323
7QG8|1|0|G|324
7QG8|1|0|A|325
7QG8|1|0|G|326
7QG8|1|0|A|327
7QG8|1|0|C|328
7QG8|1|0|A|329
7QG8|1|0|C|330
7QG8|1|0|G|331
7QG8|1|0|G|332
7QG8|1|0|U|333

Current chains

Chain 0

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S16

Chain u

30S ribosomal protein S20