3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
7QG8|1|N|U|2473
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7QG8_098 not in the Motif Atlas
Homologous match to HL_4WF9_056
Geometric discrepancy: 0.1297
The information below is about HL_4WF9_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7QG8|1|N|A|2471
7QG8|1|N|G|2472
7QG8|1|N|U|2473
7QG8|1|N|U|2474
7QG8|1|N|C|2475
7QG8|1|N|A|2476
7QG8|1|N|U|2477
7QG8|1|N|A|2478
7QG8|1|N|U|2479

Current chains

Chain N
23S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA
Chain T
50S ribosomal protein L6
Chain r
50S ribosomal protein L36

Coloring options:


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