HL_7QGH_108

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGH_108 not in the Motif Atlas

Homologous match to HL_6ORD_036

Geometric discrepancy: 0.1412

The information below is about HL_6ORD_036

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

47

Unit IDs

7QGH|1|u|A|31
7QGH|1|u|U|32
7QGH|1|u|U|33
7QGH|1|u|G|34
7QGH|1|u|A|35
7QGH|1|u|A|36
7QGH|1|u|A|37
7QGH|1|u|A|38
7QGH|1|u|U|39

Current chains

Chain u

A-site tRNA

Nearby chains

Chain 0

Small subunit ribosomal RNA; SSU rRNA