HL_7QGR_008

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0801

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7QGR|1|0|A|320
7QGR|1|0|A|321
7QGR|1|0|C|322
7QGR|1|0|U|323
7QGR|1|0|G|324
7QGR|1|0|A|325
7QGR|1|0|G|326
7QGR|1|0|A|327
7QGR|1|0|C|328
7QGR|1|0|A|329
7QGR|1|0|C|330
7QGR|1|0|G|331
7QGR|1|0|G|332
7QGR|1|0|U|333

Current chains

Chain 0

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S16

Chain K

30S ribosomal protein S20