HL_7QGR_025

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

7QGR|1|0|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_025 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0836

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

7QGR|1|0|G|1089
7QGR|1|0|U|1090
7QGR|1|0|U|1091
7QGR|1|0|A|1092
7QGR|1|0|A|1093
7QGR|1|0|G|1094
7QGR|1|0|U|1095
7QGR|1|0|C|1096

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 1

30S ribosomal protein S2

Chain 6

30S ribosomal protein S7