HL_7QGR_046

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

7QGR|1|N|G|329, 7QGR|1|N|A|330, 7QGR|1|N|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_046 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.0853

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7QGR|1|N|G|327
7QGR|1|N|U|328
7QGR|1|N|G|329
7QGR|1|N|A|330
7QGR|1|N|C|331
7QGR|1|N|A|332
7QGR|1|N|G|333
7QGR|1|N|C|334
7QGR|1|N|C|335

Current chains

Chain N

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L4

Chain h

50S ribosomal protein L24