HL_7QGR_080

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

7QGR|1|N|A|1780, 7QGR|1|N|U|1781, 7QGR|1|N|U|1782, 7QGR|1|N|A|1786

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_080 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.0886

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7QGR|1|N|U|1777
7QGR|1|N|U|1778
7QGR|1|N|U|1779
7QGR|1|N|A|1780
7QGR|1|N|U|1781
7QGR|1|N|U|1782
7QGR|1|N|A|1783
7QGR|1|N|A|1784
7QGR|1|N|A|1785
7QGR|1|N|A|1786
7QGR|1|N|A|1787

Current chains

Chain N

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L2

Chain p

50S ribosomal protein L34