HL_7QGR_101

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7QGR|1|N|G|2751, 7QGR|1|N|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_101 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0852

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7QGR|1|N|C|2745
7QGR|1|N|U|2746
7QGR|1|N|G|2747
7QGR|1|N|A|2748
7QGR|1|N|A|2749
7QGR|1|N|A|2750
7QGR|1|N|G|2751
7QGR|1|N|C|2752
7QGR|1|N|A|2753
7QGR|1|N|U|2754
7QGR|1|N|C|2755
7QGR|1|N|U|2756
7QGR|1|N|A|2757
7QGR|1|N|A|2758
7QGR|1|N|G|2759

Current chains

Chain N

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L6

Chain W

50S ribosomal protein L13

Chain r

50S ribosomal protein L36