HL_7QGR_107

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

7QGR|1|u|U|16, 7QGR|1|u|C|17, 7QGR|1|u|G|18, 7QGR|1|u|G|19, 7QGR|1|u|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_107 not in the Motif Atlas

Geometric match to HL_1GAX_004

Geometric discrepancy: 0.1315

The information below is about HL_1GAX_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_07951.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7QGR|1|u|C|13
7QGR|1|u|A|14
7QGR|1|u|G|15
7QGR|1|u|U|16
7QGR|1|u|C|17
7QGR|1|u|G|18
7QGR|1|u|G|19
7QGR|1|u|U|20
7QGR|1|u|A|21
7QGR|1|u|G|22

Current chains

Chain u

A-site tRNA

Nearby chains

Chain M

Transfer RNA; tRNA

Chain N

Large subunit ribosomal RNA; LSU rRNA