HL_7QIW_007
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GUGAGAGCC
- Length
- 9 nucleotides
- Bulged bases
- 7QIW|1|2|G|215, 7QIW|1|2|A|216, 7QIW|1|2|G|217
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIW_007 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.124
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
7QIW|1|2|G|213
7QIW|1|2|U|214
7QIW|1|2|G|215
7QIW|1|2|A|216
7QIW|1|2|G|217
7QIW|1|2|A|218
7QIW|1|2|G|219
7QIW|1|2|C|220
7QIW|1|2|C|221
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain a
- KOW domain-containing protein
Coloring options: