HL_7QIW_020

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUUCUG

Length

6 nucleotides

Bulged bases

7QIW|1|2|U|775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_020 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.2377

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

7QIW|1|2|C|773
7QIW|1|2|U|774
7QIW|1|2|U|775
7QIW|1|2|C|776
7QIW|1|2|U|777
7QIW|1|2|G|778

Current chains

Chain 2

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13