HL_7QIW_030

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

A(PSU)GAGAA(OMC)U

Length

9 nucleotides

Bulged bases

7QIW|1|2|A|1479

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_030 not in the Motif Atlas

Geometric match to HL_5TBW_031

Geometric discrepancy: 0.2456

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7QIW|1|2|A|1473
7QIW|1|2|PSU|1474
7QIW|1|2|G|1475
7QIW|1|2|A|1476
7QIW|1|2|G|1477
7QIW|1|2|A|1478
7QIW|1|2|A|1479
7QIW|1|2|OMC|1480
7QIW|1|2|U|1481

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain f

60S ribosomal protein eL31