HL_7QIW_065

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGGAAGCG

Length

8 nucleotides

Bulged bases

7QIW|1|2|A|3237, 7QIW|1|2|A|3238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_065 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.1496

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7QIW|1|2|C|3234
7QIW|1|2|G|3235
7QIW|1|2|G|3236
7QIW|1|2|A|3237
7QIW|1|2|A|3238
7QIW|1|2|G|3239
7QIW|1|2|C|3240
7QIW|1|2|G|3241

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

60S ribosomal protein uL13