HL_7QIW_072

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

7QIW|1|2|C|659

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_072 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0616

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7QIW|1|2|U|651
7QIW|1|2|C|652
7QIW|1|2|U|653
7QIW|1|2|U|654
7QIW|1|2|G|655
7QIW|1|2|1MA|656
7QIW|1|2|A|657
7QIW|1|2|A|658
7QIW|1|2|C|659
7QIW|1|2|A2M|660

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain c

Putative 60S ribosomal protein L27a-3-like

Chain g

60S ribosomal protein eL32