HL_7QIW_080
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- AUCCCAUCAGAACU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIW_080 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.1127
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7QIW|1|5|A|32
7QIW|1|5|U|33
7QIW|1|5|C|34
7QIW|1|5|C|35
7QIW|1|5|C|36
7QIW|1|5|A|37
7QIW|1|5|U|38
7QIW|1|5|C|39
7QIW|1|5|A|40
7QIW|1|5|G|41
7QIW|1|5|A|42
7QIW|1|5|A|43
7QIW|1|5|C|44
7QIW|1|5|U|45
Current chains
- Chain 5
- 5S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Ribosomal_L18_c domain-containing protein
- Chain M
- 60S ribosomal protein uL5
Coloring options: