HL_7QIZ_006

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGGAG

Length

5 nucleotides

Bulged bases

7QIZ|1|2|G|207, 7QIZ|1|2|A|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_006 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.1709

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QIZ|1|2|C|205
7QIZ|1|2|G|206
7QIZ|1|2|G|207
7QIZ|1|2|A|208
7QIZ|1|2|G|209

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain a

KOW domain-containing protein