HL_7QIZ_020

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUCUG

Length

6 nucleotides

Bulged bases

7QIZ|1|2|U|775

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_020 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.2378

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

7QIZ|1|2|C|773
7QIZ|1|2|U|774
7QIZ|1|2|U|775
7QIZ|1|2|C|776
7QIZ|1|2|U|777
7QIZ|1|2|G|778

Current chains

Chain 2

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13