HL_7QIZ_024

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

7QIZ|1|2|C|969, 7QIZ|1|2|C|971, 7QIZ|1|2|A|972

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_024 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2773

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|C|968
7QIZ|1|2|C|969
7QIZ|1|2|PSU|970
7QIZ|1|2|C|971
7QIZ|1|2|A|972
7QIZ|1|2|G|973

Current chains

Chain 2

25S rRNA

Nearby chains

Chain c

Ribosomal_L18e/L15P domain-containing protein

Chain p

60S ribosomal protein eL42