HL_7QIZ_031

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGCACUU

Length

7 nucleotides

Bulged bases

7QIZ|1|2|G|1518, 7QIZ|1|2|U|1522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_031 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.3301

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7QIZ|1|2|G|1517
7QIZ|1|2|G|1518
7QIZ|1|2|C|1519
7QIZ|1|2|A|1520
7QIZ|1|2|C|1521
7QIZ|1|2|U|1522
7QIZ|1|2|U|1523

Current chains

Chain 2

25S rRNA

Nearby chains

Chain R

50S ribosomal protein L22, chloroplastic

Chain T

Ribosomal protein L19