HL_7QIZ_037

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCUCAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_037 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2605

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

7QIZ|1|2|G|1724
7QIZ|1|2|C|1725
7QIZ|1|2|U|1726
7QIZ|1|2|C|1727
7QIZ|1|2|A|1728
7QIZ|1|2|G|1729
7QIZ|1|2|C|1730

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain q

60S ribosomal protein eL43