HL_7QIZ_041

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7QIZ|1|2|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_041 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0642

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7QIZ|1|2|C|1929
7QIZ|1|2|U|1930
7QIZ|1|2|U|1931
7QIZ|1|2|C|1932
7QIZ|1|2|G|1933
7QIZ|1|2|G|1934

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain q

60S ribosomal protein eL43

Chain t

60S ribosomal protein L41