HL_7QIZ_043

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG(OMU)AC

Length

5 nucleotides

Bulged bases

7QIZ|1|2|G|2115

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_043 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.177

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7QIZ|1|2|G|2114
7QIZ|1|2|G|2115
7QIZ|1|2|OMU|2116
7QIZ|1|2|A|2117
7QIZ|1|2|C|2118

Current chains

Chain 2

25S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain T

Ribosomal protein L19

Chain Y

TRASH domain-containing protein