HL_7QIZ_046

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

A(A2M)GAAA(PSU)U

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_046 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3427

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7QIZ|1|2|A|2222
7QIZ|1|2|A2M|2223
7QIZ|1|2|G|2224
7QIZ|1|2|A|2225
7QIZ|1|2|A|2226
7QIZ|1|2|A|2227
7QIZ|1|2|PSU|2228
7QIZ|1|2|U|2229

Current chains

Chain 2

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L36

Chain p

60S ribosomal protein eL42