HL_7QIZ_056

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(PSU)GAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_056 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3845

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7QIZ|1|2|G|2747
7QIZ|1|2|PSU|2748
7QIZ|1|2|G|2749
7QIZ|1|2|A|2750
7QIZ|1|2|A|2751
7QIZ|1|2|A|2752
7QIZ|1|2|G|2753
7QIZ|1|2|C|2754

Current chains

Chain 2

25S rRNA

Nearby chains

Chain G

Ribosomal_L18_c domain-containing protein

Chain V

60S ribosomal protein eL21

Chain p

60S ribosomal protein eL42