HL_7QIZ_057
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGGAAUUCG
- Length
- 9 nucleotides
- Bulged bases
- 7QIZ|1|2|G|2781
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_057 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.085
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
7QIZ|1|2|C|2780
7QIZ|1|2|G|2781
7QIZ|1|2|G|2782
7QIZ|1|2|A|2783
7QIZ|1|2|A|2784
7QIZ|1|2|U|2785
7QIZ|1|2|U|2786
7QIZ|1|2|C|2787
7QIZ|1|2|G|2788
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L13
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain k
- 60S ribosomal protein L36
- Chain p
- 60S ribosomal protein eL42
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