HL_7QIZ_062

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_062 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.0661

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7QIZ|1|2|C|3028
7QIZ|1|2|G|3029
7QIZ|1|2|A|3030
7QIZ|1|2|G|3031
7QIZ|1|2|A|3032
7QIZ|1|2|G|3033

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain o

Ubiquitin