HL_7QIZ_065

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGGAAGCG

Length

8 nucleotides

Bulged bases

7QIZ|1|2|A|3237, 7QIZ|1|2|A|3238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_065 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.1581

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7QIZ|1|2|C|3234
7QIZ|1|2|G|3235
7QIZ|1|2|G|3236
7QIZ|1|2|A|3237
7QIZ|1|2|A|3238
7QIZ|1|2|G|3239
7QIZ|1|2|C|3240
7QIZ|1|2|G|3241

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain Q

Pectinesterase