HL_7QIZ_070
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGAAU(PSU)(OMG)CAGAAUCCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 7QIZ|1|8|A|85, 7QIZ|1|8|C|89, 7QIZ|1|8|U|91
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_070 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.3925
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7QIZ|1|8|U|74
7QIZ|1|8|G|75
7QIZ|1|8|A|76
7QIZ|1|8|A|77
7QIZ|1|8|U|78
7QIZ|1|8|PSU|79
7QIZ|1|8|OMG|80
7QIZ|1|8|C|81
7QIZ|1|8|A|82
7QIZ|1|8|G|83
7QIZ|1|8|A|84
7QIZ|1|8|A|85
7QIZ|1|8|U|86
7QIZ|1|8|C|87
7QIZ|1|8|C|88
7QIZ|1|8|C|89
7QIZ|1|8|G|90
7QIZ|1|8|U|91
7QIZ|1|8|G|92
7QIZ|1|8|A|93
7QIZ|1|8|A|94
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- KOW domain-containing protein
- Chain j
- Similar to 60S ribosomal protein L35
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
Coloring options: