HL_7QIZ_079

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UUAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_079 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.0747

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7QIZ|1|S2|U|372
7QIZ|1|S2|U|373
7QIZ|1|S2|A|374
7QIZ|1|S2|G|375
7QIZ|1|S2|G|376
7QIZ|1|S2|G|377

Current chains

Chain S2

18S

Nearby chains

Chain EA

S5 DRBM domain-containing protein

Chain GA

40S body ribosomal protein uS4

Chain JA

40S ribosomal protein S15a-1

Chain z

Ribosomal_S17_N domain-containing protein