HL_7QIZ_080
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 7QIZ|1|S2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_080 not in the Motif Atlas
- Geometric match to HL_4V88_195
- Geometric discrepancy: 0.0796
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|C|397
7QIZ|1|S2|C|398
7QIZ|1|S2|U|399
7QIZ|1|S2|G|400
7QIZ|1|S2|A|401
7QIZ|1|S2|G|402
7QIZ|1|S2|A|403
7QIZ|1|S2|A|404
7QIZ|1|S2|A|405
7QIZ|1|S2|C|406
7QIZ|1|S2|G|407
7QIZ|1|S2|G|408
Current chains
- Chain S2
- 18S
Nearby chains
- Chain FA
- 40S ribosomal protein S6
- Chain KA
- 40S ribosomal protein S24
- Chain w
- 40S ribosomal protein S4
- Chain y
- 40S ribosomal protein S8
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