HL_7QIZ_081

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

U(OMC)CAAGGA

Length

8 nucleotides

Bulged bases

7QIZ|1|S2|A|420

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_081 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.2873

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

7QIZ|1|S2|U|417
7QIZ|1|S2|OMC|418
7QIZ|1|S2|C|419
7QIZ|1|S2|A|420
7QIZ|1|S2|A|421
7QIZ|1|S2|G|422
7QIZ|1|S2|G|423
7QIZ|1|S2|A|424

Current chains

Chain S2

18S

Nearby chains

Chain FA

40S ribosomal protein S6

Chain X

60S ribosomal protein uL14