HL_7QIZ_085

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_085 not in the Motif Atlas

Geometric match to HL_4V88_200

Geometric discrepancy: 0.0831

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QIZ|1|S2|C|572
7QIZ|1|S2|A|573
7QIZ|1|S2|G|574
7QIZ|1|S2|C|575
7QIZ|1|S2|C|576
7QIZ|1|S2|G|577

Current chains

Chain S2

18S

Nearby chains

Chain CA

40S body ribosomal protein uS12