HL_7QIZ_093

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_093 not in the Motif Atlas

Geometric match to HL_4V88_210

Geometric discrepancy: 0.0712

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QIZ|1|S2|A|1087
7QIZ|1|S2|G|1088
7QIZ|1|S2|A|1089
7QIZ|1|S2|A|1090
7QIZ|1|S2|A|1091
7QIZ|1|S2|U|1092

Current chains

Chain S2

18S

Nearby chains

Chain DA

40S ribosomal protein S26

Chain EA

S5 DRBM domain-containing protein

Chain JA

40S ribosomal protein S15a-1