HL_7QIZ_095
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GAC(I2T)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|1199
- QA status
- Modified nucleotides: I2T
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_095 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1074
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|G|1191
7QIZ|1|S2|A|1192
7QIZ|1|S2|C|1193
7QIZ|1|S2|I2T|1194
7QIZ|1|S2|C|1195
7QIZ|1|S2|A|1196
7QIZ|1|S2|A|1197
7QIZ|1|S2|C|1198
7QIZ|1|S2|A|1199
7QIZ|1|S2|C|1200
Current chains
- Chain S2
- 18S
Nearby chains
- Chain QA
- 40S ribosomal protein uS19
- Chain RA
- 40S ribosomal protein uS9
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
- Chain aA
- tRNA_1
Coloring options: