HL_7QIZ_097

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GAGCGA(PSU)U

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_097 not in the Motif Atlas

Geometric match to HL_6CZR_215

Geometric discrepancy: 0.3123

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7QIZ|1|S2|G|1298
7QIZ|1|S2|A|1299
7QIZ|1|S2|G|1300
7QIZ|1|S2|C|1301
7QIZ|1|S2|G|1302
7QIZ|1|S2|A|1303
7QIZ|1|S2|PSU|1304
7QIZ|1|S2|U|1305

Current chains

Chain S2

18S

Nearby chains

Chain EA

S5 DRBM domain-containing protein

Chain u

40S ribosomal protein SA