HL_7QIZ_098

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(PSU)UAAUUC

Length

8 nucleotides

Bulged bases

7QIZ|1|S2|U|1317

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_098 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.2816

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

7QIZ|1|S2|G|1312
7QIZ|1|S2|PSU|1313
7QIZ|1|S2|U|1314
7QIZ|1|S2|A|1315
7QIZ|1|S2|A|1316
7QIZ|1|S2|U|1317
7QIZ|1|S2|U|1318
7QIZ|1|S2|C|1319

Current chains

Chain S2

18S

Nearby chains

Chain AA

40S ribosomal protein S17