HL_7QIZ_099

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUUCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_099 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1063

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QIZ|1|S2|G|1363
7QIZ|1|S2|U|1364
7QIZ|1|S2|U|1366
7QIZ|1|S2|C|1367
7QIZ|1|S2|C|1368

Current chains

Chain S2

18S

Nearby chains

Chain RA

40S ribosomal protein uS9

Chain UA

40S ribosomal protein eS19