HL_7QIZ_106

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

7QIZ|1|2|C|659

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_106 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0605

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7QIZ|1|2|U|651
7QIZ|1|2|C|652
7QIZ|1|2|U|653
7QIZ|1|2|U|654
7QIZ|1|2|G|655
7QIZ|1|2|1MA|656
7QIZ|1|2|A|657
7QIZ|1|2|A|658
7QIZ|1|2|C|659
7QIZ|1|2|A2M|660

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain c

Ribosomal_L18e/L15P domain-containing protein

Chain g

60S ribosomal protein eL32