HL_7QIZ_114
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_114 not in the Motif Atlas
- Homologous match to HL_8P4V_072
- Geometric discrepancy: 0.1027
- The information below is about HL_8P4V_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7QIZ|1|8|U|52
7QIZ|1|8|A|53
7QIZ|1|8|G|54
7QIZ|1|8|C|55
7QIZ|1|8|G|56
7QIZ|1|8|A|57
7QIZ|1|8|A|58
7QIZ|1|8|A|59
7QIZ|1|8|U|60
7QIZ|1|8|G|61
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- Ribosomal_L23eN domain-containing protein
- Chain j
- Similar to 60S ribosomal protein L35
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
Coloring options: