HL_7QIZ_116

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

7QIZ|1|S2|A|420

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_116 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1724

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

7QIZ|1|S2|OMC|418
7QIZ|1|S2|C|419
7QIZ|1|S2|A|420
7QIZ|1|S2|A|421
7QIZ|1|S2|G|422
7QIZ|1|S2|G|423

Current chains

Chain S2

18S

Nearby chains

Chain FA

40S ribosomal protein S6

Chain X

60S ribosomal protein uL14