HL_7QIZ_119
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AUUGCAAUUGU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|1563, 7QIZ|1|S2|U|1564, 7QIZ|1|S2|G|1565
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_119 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.2401
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7QIZ|1|S2|A|1556
7QIZ|1|S2|U|1557
7QIZ|1|S2|U|1558
7QIZ|1|S2|G|1559
7QIZ|1|S2|C|1560
7QIZ|1|S2|A|1561
7QIZ|1|S2|A|1562
7QIZ|1|S2|U|1563
7QIZ|1|S2|U|1564
7QIZ|1|S2|G|1565
7QIZ|1|S2|U|1566
7QIZ|1|S2|PSU|1567
Current chains
- Chain S2
- 18S
Nearby chains
- Chain QA
- 40S ribosomal protein uS19
- Chain TA
- 40S ribosomal protein uS13
- Chain UA
- 40S ribosomal protein eS19
- Chain XA
- 40S ribosomal protein uS14
Coloring options: