HL_7QIZ_120
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GCUGAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_120 not in the Motif Atlas
- Geometric match to HL_6CFJ_107
- Geometric discrepancy: 0.1204
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
7QIZ|1|aA|G|3
7QIZ|1|aA|C|4
7QIZ|1|aA|U|5
7QIZ|1|aA|G|6
7QIZ|1|aA|A|7
7QIZ|1|aA|U|8
7QIZ|1|aA|A|9
7QIZ|1|aA|A|10
7QIZ|1|aA|C|11
Current chains
- Chain aA
- tRNA_1
Nearby chains
- Chain QA
- 40S ribosomal protein uS19
- Chain RA
- 40S ribosomal protein uS9
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain bA
- mRNA
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